PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_20910.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 48aa    MW: 5151.81 Da    PI: 7.3435
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_20910.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.6e-081437225
                             -S---SGGGGTS--TTTTT-SS-S CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                             k ++C  f+ t  C++G++C+F H
  Rsa1.0_20910.1_g00001.1 14 KSKPCTKFFSTSGCPFGENCHFLH 37
                             7899******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.841240IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-81338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-91437IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-61437IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 48 aa     Download sequence    Send to blast
MFGTEMESTG LGSKSKPCTK FFSTSGCPFG ENCHFLHYVP GGYNAVAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535312e-52AK353531.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-B10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135207.13e-24PREDICTED: zinc finger CCCH domain-containing protein 36-like
RefseqXP_013651962.13e-24PREDICTED: zinc finger CCCH domain-containing protein 36-like
RefseqXP_013693955.12e-24PREDICTED: zinc finger CCCH domain-containing protein 36-like
SwissprotQ9C7C32e-24C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLA0A078C9S44e-24A0A078C9S4_BRANA; BnaA03g32110D protein
TrEMBLM4CB574e-24M4CB57_BRARP; Uncharacterized protein
STRINGBra001436.1-P1e-23(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-25C3H family protein